• Who am I?

    Since Jan. 2022, I am senior researcher (directeur de recherche) at INRAE (French National Research Institute for Agriculture, Food and Environment) in the MISTEA (Mathematics, Informatics and STatistics for Environment and Agronomy) research unit. I was previously associate researcher at INRAE since Sept. 2020 and before (2010-2020) Assistant then Associate Professor (HDR) at University of Montpellier, in the Laboratory of Informatics, Robotics, and Microelectronics of Montpellier (LIRMM).

    My research topics include ontologies (and semantic artefacts in general), ontology repositories, semantic data indexing and annotation, semantic Web, text mining, knowledge representation, knowledge graphs... symbolic AI in general.

    Since 2015, I lead the AgroPortal (https://agroportal.eu) project, a reference vocabularyand ontology repository for agri-food and co-lead the OntoPortalAlliance.

    I am also involved in semantics related activities for the development of the European Open Science Cloud (EOSC), especially as WP-lead in the Horizon Europe FAIR-IMPACT project and participant of the FIDELIS project. And starting in 2026, three new EOSC related Horizon Europe projects: EOSC CONNECT, FLUID-AI and CDIF4EOSC. I also brings semantic interoperability expertise to the implementation of the Common European Agricultural Data Space (CEADS project) of the Digital Europe program.

    From June 2019 to June 2024, I was the principal investigator of ANR project D2KAB (Data to Knowledge in Agronomy and Biodiversity). D2KAB was a 12 partners, 35 people, 950K€ (without salaries) multidisciplinary project which objective was to create a framework to turn agronomy and biodiversity data into knowledge –semantically described, interoperable, actionable, open– and investigate scientific methods and tools to exploit this knowledge for applications in science & agriculture.

    From 2013 to 2019, I was the principal investigator of the SIFR project (Semantic Indexing of French Biomedical Data Resources) interested in designing ontology-based services first for French biomedicine but also in agronomy. The project was mainly funded by the French ANR Young Researcher –JCJC– program and the H2020 Marie Sklodowska-Curie program.

    I was also involved in two other ANR projects: FooSIN and DACE-DL now finished. And co-PI of ANR PractiKPharma project (Practice-based evidences for actioning Knowledge in Pharmacogenomics) working on semantic annotation of French clinical notes with terminologies and ontologies to encode pharmacogenomics relations (disease-gene profile-adverse effect).

    From 2018 to 2020, I was visiting scholar at Inria Wimmics in Dr. Fabien Gandon's group.

    From 2015 to 2018, I was a visiting scholar (H2020 Marie-Skłodowska Curie fellow) at the Stanford Center for Biomedical Informatics Research (BMIR) within Pr. Mark A. Musen's group.

     

    From 2007 to 2010, I also served I served as a postdoc in the same lab, where I was working closely with Pr. Nigam H. Shah, on semantic annotations of biomedical data using biomedical ontologies in the context of the National Center for Biomedical Ontology (NCBO) project. I contributed actively to the design, evolution and development of the NCBO BioPortal, an ontology repository widely used in the biomedical community.

    I obtained a BSc, MSc, and PhD in Informatics from University of Montpellier in Nov. 2006 working on multi-agent systems, grid and service-oriented computing in the context of the European FP6-IST ELeGI project.

    I am the (co)author of 200 publications or communications cumulating more than 4820 citations, including 33 international journals in multiple domains (biomedical informatics, semantic Web, distributed systems & AI), 6 as first author, 4 as last, and 91 conference or workshop articles.

    Since 2012, I co-supervised 28+ MSc. Students & 6 PhD students (J-A Lossio, G. Surroca, A. Annane, B. Darnala, O. Mechhour, K. Djouad), 10 postdocs, 9 research engineers.

    Teaching

    I have 9 years of various academic teaching (~1400h ~TD) to different kind of students of mixed levels. At Polytech, I have taught programming, computer architecture, web applications, semantic web to engineer students.

     

    I aught Informatics at the Polytech Montpellier Engineering School. In 2012, I uploaded a course called "Internet Application and Interoperability (AIOP)" on iTunesU.

     

    I was also interested in the use of ICT in Education and especially the use of iPads within the classroom. I was the representative for Polytech Montpellier Information and Communication Technologies in Education (TICE). I co-chair the “return of experience” track of TICE 2014.

    and more...

  • RESEARCH PROJECTS & TOPICS

    I am working in the semantic Web area, designing, implementing, experimenting andevaluating scientific methods and technologies for ontologies and their use.I am interested in knowledge engineering and data interoperability issues, especially in the use of ontologies (or more largely any semantic resources or artefacts) for knowledge representation, extraction and sharing. I am an expert on ontology repositories (aka semanticartefact catalogues) and ontology-based services (topic of my HDR) and I develop and maintain a scientific andtechnical expertise on this subject especially through a partnership with Stanford BMIR and the development of the OntoPortaltechnology with the vision to promote data interoperability and FAIR ontologies in multiple domains. This fairly applicative context allows me to investigate scientific issues in several sub-fields of knowledgeengineering: semantic annotation, terminology extraction, knowledge graphs,linked-open data, text mining, ontology alignment, metadata & ontologies. I have experience in the biomedical domain (NCBO & SIFRprojects) –for instance on semantic annotation and indexing of biomedical text or clinical notes– and my challenge is to abstract and generalize informatics methods to other languages (e.g., French) and domains (e.g., agronomy, biodiversity). I led the D2KAB project, a12-partner and 35-person ANR research action which focus on implementing methods to transform data into knowledgefor agronomy and biodiversity and in which we design a vocabulary and ontology repository for agronomy and related domains (AgroPortal project). Iam also involved in semantics related activities for the development of the EuropeanOpen Science Cloud (EOSC), especially as WP-lead in the Horizon Europe FAIR-IMPACT project and participant of the FIDELISproject, and starting in 2026the EOSC CONNECT, FLUID-AI and CDIF4EOSC projects. I am also bringing semantic interoperability expertise to the implementation of the Common European Agricultural Data Space (CEADS project).

    Cross-Domain Interoperability Framework (CDIF) for the European Open Science Cloud (EOSC)

    Establishing A European Network of TrustworthyDigital Repositories

    Deployment and operating a European framework for the secure and trusted data space for agriculture

    Ontology Portal forAstronomy Linked-data

    VitisExplorer

    Information System to explore the agronomic and oenological potential of vine genotypes

    Expanding FAIR Solutions across EOSC

    DACE-DL

    DAta-CEntric AI-driven Data Linking

    OntoPortal Alliance

    French section of the GO FAIR Food Systems Implementation Network

    Data to Knowledge in Agronomy and Biodiversity

    Visa Text Mining

    Vocabulary and ontology repository for agriculture, plant sciences, nutrition and biodiversity

    Practice-based evidences for actioning Knowledge in Pharmacogenomics project

    Semantic Indexing of French Biomedical Data Resources project

    National Center for Biomedical Ontology

    European Learning Grid Infrastructure

    Learning Grid of Excellence Working Group

  • PUBLICATIONS

    Access my consolidated and complete list on on HAL, the French publication archive... or others Web profiles.

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  • COMPLETE RESUME

    English version of my current CV (30 pages) as of February 2026.

  • LINKS

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  • MISTEA – INRAE Montpellier
    2, place Pierre Viala
    34060 Montpellier Cedex 2
    France
    I am located in building 21 (Office 412, level 4)
    0625831982
  • MEDIA

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    OntoPortal Workshop 2025

    Group photo

    Berlin, Sep. 30th, 2025

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    FAIRfest 2025

    FAIR-IMPACT and FAIRCORE4EOSC final project meetings

    The Hague, Feb. 20th, 2025

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    OntoPortal Workshop 2024

    Group photo

    Stanford, Sept. 24th, 2024

    Embrapa's & GO FAIR Agro Seminar

    Ontology Repositories�with the OntoPortal Technology�& a deeper look into AgroPortal 

    Brasilia, April. 24th, 2024

    Vocabulary Symposium2023

    Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology

    Acton & online, Nov. 15th, 2023

    NKOS Workshop 2023

    State-of-the-art browsing of SKOS resources in AgroPortal

    Online and in Daegu, Nov. 9th, 2023

    GO FAIR Agro Webminar

    FAIR DATA requires FAIR ONTOLOGIES, how do we do?

    Online, Oct. 17th, 2023

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    FAIR-IMPACT All HandsMeeting

     Group photo

    The Hague, Oct. 4th, 2023

    FAIR-IMPACT Semantic Artefact Governance Workshop

    Workshop organized in conjunction with the 2nd OntoPortal Worksop

    Online and in Lecce, Sept. 28th, 2023

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    LifeWatch Semantic Academy 2023

    Ontology repositories 

    Lecce, Sept. 26th, 2023

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    6th Annual AGROVOC editorial community meeting

    AgroPortal: a vocabulary and ontology repository for agri-food

    Munich, July 13th, 2023

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    Journées EOSC France

    Panel: how to improve the impact of and on the EOSC

    Montpellier, June. 14th, 2023

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    OntoPortal Workshop 2022

    Group photo

    Montpellier, Sept. 28th, 2022

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    MISTEA general assembly

     Group photo

    Juvignac, Nov. 29th, 2022

    Horizon EU FAIR-IMPACT kick-off

    Contribution to Metadata and Ontologies in EOSC

    Amsterdam, June 28th, 2022

    CGIAR Ontologies Community of Practice Webinar

    AgroPortal Ontology Repository:

    What is the value added of indexing the CGIAR

    ontologies?

    Online, Oct. 4th, 2022

    OntoCommons Workshop

    OntoPortal technology and partnership for co-developing ontology repositories

    Online, Nov. 3rd, 2021

    Tutorial @SemTech 2021

    How to use ontology repositories and ontology-based services

    Online, Feb. 24th, 2021

    Presentation @RDA-IGAD

    AgroPortal: a vocabulary and ontology repository for agronomy

    Online, May 26, 2020

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    2nd Annual GO FAIR Implementation Networks Meeting

    Group photo

    Hamburg, Jan. 24th, 2020

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    Keynote @IB2019

    Agricultural semantics interoperability and ontology-based annotations with AgroPortal

    Paris, Sep. 20th, 2019

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    HDR defense jury

    Ontology Repository and Ontology-Based Services – Challenges, contributions and applications to biomedicine & agronomy

    Montpellier, May 28th, 2019

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    Tutorial @ENVRI-FAIR Data FAIRness Summer School

    How to use ontology repositories and ontology-based services

    Lecce, July 5th, 2019

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    JNSO 2018

    RDA Vocabulary Services Interest Group

    Paris, Dec. 6th, 2018

    Interview @SIMBig 2017

    4th Int. Symp. on INformation Management and Big Data

    Lima, Sep. 5th, 2017

    Interview @INIST

    Séquence de com

    Nancy, Dec. 5th, 2017

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    2nd IBC-NUMEV AgroHackathon 2017

    Ending the competition, partnered with the DigitAg Challenge

    Montpellier, July 2nd, 2017

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    GODAN Summit 2016

    Booth with INRA

    New York, Sep. 16th, 20016

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    1st IBC-NUMEV AgroHackathon

    Group photo

    Montpellier, June 29th, 2016

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    2nd BD2K, 4th Network of BioThings Hackathon

    Wining the hackathon with the NCBO/CEDAR team

    Stanford, Nov. 20th, 2015

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    ESWC 2013

    Closing ceremony

    Montpellier, May 30th, 2013

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    PhD defense

    Dynamic Service Generation: Agent interactions for service exchange on the Grid

    Montpellier, Nov. 16th, 2006

  • FUNDING

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    Digital Europe Programme

    Grant N° 101195295

    Support for CEADS

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    Open Call for Open Science Projects and Services

    Grant N° 101057344

    Support for OPAL

     

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    Horizon Europe

    Grant N° 101057344

    Grant N° 101188078

    Grant N° 101292473

    Support for FAIR-IMPACT, FIDELIS

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    JCJC, Generic, MRSEI programs

    Support for SIFR, PractiKPharma, eRosa, D2KAB, FooSIN & DACE-DL

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    MSCA program

    Grant N° 701771

    Support for SIFR

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    PIA program

    Support for AgroPortal, AgroHackathons and OntoPortal Alliance.

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    #DigitAg Convergence Institute

    Support for D2KAB and AgroHackathons.

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    Plan National Dépérissement du Vignoble

    Support for VitisExplorer project.

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    Labex Agro

    Support for AgroPortal.

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    BSN-10 Program

    Support for VisaTM.

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    H2020 OpenMinTed call for tender 2018

    Support for VisaTM.

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    PIA program

    Support for AgroPortal.

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    PICS program

    IRL program

    Support for SIFR.

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    Scientific council PhD program

    Support for SIFR and other infrastructure.

  • ARCHIVES

    Links to archivesd web pages that describe previous projects or topics.